I suspected as much. It can be a problem if they allowed the reamer to wallow out the neck.
That being said, I still think there is an issue with the chamber being slightly too deep.
As a recommendation, I'd suggest you conduct a simple test. Load a .223 case with a mild charge, and seat the bullet long, so it is in the lands/grooves. This will allow the case to remain against the bolt face as ignition happens, and limit case growth. Then measure the case length and shoulder length against some of the factory .223 cases you shot/fireformed in your chamber. This will give you a very good idea of what is happening in your chamber.